Science and Research

The IBEX knowledge-base a community resource enabling adoption and development of immunofluorescence imaging methods

The iterative bleaching extends multiplexity (IBEX) Knowledge-Base is a central portal for researchers adopting IBEX and related 2D and 3D immunofluorescence imaging methods. The design of the Knowledge-Base is modeled after efforts in the open-source software community and includes three facets: a development platform (GitHub), static website, and service for data archiving. The Knowledge-Base facilitates the practice of open science throughout the research life cycle by providing validation data for recommended and non-recommended reagents, such as primary and secondary antibodies. In addition to reporting negative data, the Knowledge-Base empowers method adoption and evolution by providing a venue for sharing protocols, videos, datasets, software, and publications. A dedicated discussion forum fosters a sense of community among researchers while addressing questions not covered in published manuscripts. Together, scientists from around the world are advancing scientific discovery at a faster pace, reducing wasted time and effort, and instilling greater confidence in the resulting data.

  • Yaniv, Z.
  • Anidi, I. U.
  • Arakkal, L.
  • Arroyo-Mejías, A. J.
  • Beuschel, R. T.
  • Börner, K.
  • Chu, C. J.
  • Clark, B. H.
  • Clatworthy, M. R.
  • Colautti, J.
  • Coscia, F.
  • Croteau, J.
  • Denha, S.
  • Dever, R.
  • Dutra, W. O.
  • Fritzsche, S.
  • Fullam, S.
  • Gerner, M. Y.
  • Gola, A.
  • Gollob, K. J.
  • Hernandez, J. M.
  • Hor, J. L.
  • Ichise, H.
  • Jing, Z.
  • Jonigk, D.
  • Kandov, E.
  • Kastenmüller, W.
  • Koenig, J. F. E.
  • Kothurkar, A.
  • Kortekaas, R. K.
  • Kreins, A. Y.
  • Lamborn, I. T.
  • Lin, Y.
  • Luciano Pereira Morais, K.
  • Lunich, A.
  • Luz, J. C. S.
  • MacDonald, R. B.
  • Makranz, C.
  • Maltez, V. I.
  • McDonough, J. E.
  • Moriarty, R. V.
  • Ocampo-Godinez, J. M.
  • Murakami Olyntho, V.
  • Oxenius, A.
  • Padhan, K.
  • Remmert, K.
  • Richoz, N.
  • Schrom, E. C.
  • Shang, W.
  • Shi, L.
  • Shih, R. M.
  • Speranza, E.
  • Stierli, S.
  • Teichmann, S. A.
  • Verse, T. Z.
  • Vierhout, M.
  • Wachter, B. T.
  • Wade-Vallance, A. K.
  • Williams, M.
  • Zangger, N.
  • Germain, R. N.
  • Radtke, A. J.

Keywords

  • *Fluorescent Antibody Technique/methods
  • *Knowledge Bases
  • Software
  • Humans
  • cell biology
  • human
  • mouse
  • multiplexed optical imaging
  • open science
  • reagent validation
  • rhesus macaque
  • spatial biology
  • xenopus
  • zebrafish
Publication details
DOI: 10.7554/eLife.105737
Journal: Elife
Work Type: Original
Location: BREATH
Disease Area: PLI
Partner / Member: MHH
Access-Number: 41575186


chevron-down